Files in BioAlvaro/ProteoMS
Quality Control of Protemics Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/MQmetrics_import_functions.r
R/MaxQuantAnalysisInfo.R
R/PlotAcquisitionCycle.R
R/PlotAllDynamicRange.R
R/PlotAndromedaScore.R
R/PlotCharge.R
R/PlotCombinedDynamicRange.R
R/PlotHydrophobicity.R
R/PlotIntensity.R
R/PlotIsotopePattern.R
R/PlotMsMs.R
R/PlotPCA.R
R/PlotPTM.R
R/PlotPTMAcrossSamples.R
R/PlotPeaks.R
R/PlotPeptidesIdentified.R
R/PlotProteaseSpecificity.R
R/PlotProteinCoverage.R
R/PlotProteinOverlap.R
R/PlotProteinPeptideRatio.R
R/PlotProteinsIdentified.R
R/PlotTotalIonCurrent.R
R/PlotiRT.R
R/PlotiRTScore.R
R/ReportTables.R
R/generateReport.R
R/make_MQCombined.R
README.md
inst/extdata/combined/proc/#runningTimes.txt
inst/extdata/combined/txt/evidence.txt
inst/extdata/combined/txt/modificationSpecificPeptides.txt
inst/extdata/combined/txt/msScans.txt
inst/extdata/combined/txt/msmsScans.txt
inst/extdata/combined/txt/parameters.txt
inst/extdata/combined/txt/peptides.txt
inst/extdata/combined/txt/proteinGroups.txt
inst/extdata/combined/txt/summary.txt
inst/extdata/mqpar.xml
inst/rmd/template_report.Rmd
man/MaxQuantAnalysisInfo.Rd
man/PlotAcquisitionCycle.Rd
man/PlotAllDynamicRange.Rd
man/PlotAndromedaScore.Rd
man/PlotCharge.Rd
man/PlotCombinedDynamicRange.Rd
man/PlotHydrophobicity.Rd
man/PlotIntensity.Rd
man/PlotIsotopePattern.Rd
man/PlotMsMs.Rd
man/PlotPCA.Rd
man/PlotPTM.Rd
man/PlotPTMAcrossSamples.Rd
man/PlotPeaks.Rd
man/PlotPeptidesIdentified.Rd
man/PlotProteaseSpecificity.Rd
man/PlotProteinCoverage.Rd
man/PlotProteinOverlap.Rd
man/PlotProteinPeptideRatio.Rd
man/PlotProteinsIdentified.Rd
man/PlotTotalIonCurrent.Rd
man/PlotiRT.Rd
man/PlotiRTScore.Rd
man/ReportTables.Rd
man/figures/README-example_long_names-1.png
man/generateReport.Rd
man/make_MQCombined.Rd
tests/testthat.R
tests/testthat/test-MaxQuantAnalysisinfo.R
tests/testthat/test-ReportTables.R
tests/testthat/test-makeMQCombined.R
vignettes/.gitignore
vignettes/MQmetrics.Rmd
