PlotCombinedDynamicRange: Dynamic range of all the samples combined
In BioAlvaro/ProteoMS: Quality Control of Protemics Data

Description Usage Arguments Value Examples

View source: R/PlotCombinedDynamicRange.R

Dynamic range of all the samples combined

1	PlotCombinedDynamicRange(MQCombined, show_shade = TRUE, percent_proteins = 0.9)

`MQCombined`	Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`show_shade`	Creates a shade showing where the `percent_proteins` are. Default is TRUE.
`percent_proteins`	Determines the percentage for the show_shade parameter. Default is 0.90 (90% of the proteins).

Returns the dynamic range for all samples combined.

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotCombinedDynamicRange(MQCombined)