ProteoMS: Quality Control of Protemics Data

Description Usage Arguments Value Examples

Andromeda score for the best associated MS/MS spectrum.

PlotAndromedaScore(
  MQCombined,
  show_median = TRUE,
  size_median = 1.5,
  palette = "Set2",
  plots_per_page = 5
)

`MQCombined`	Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`show_median`	If true it will show the median of each group, as a red dashed line.By default is TRUE.
`size_median`	The width of the median line in the plots.
`palette`	The palette from the Package RColorBrewer. By default is 'Set2'.
`plots_per_page`	Establish the maximum number of plots per page.

Plots the MaxQuant Andromeda Score.

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotAndromedaScore(MQCombined)