PlotiRT: Max intensities of the iRT peptides in each sample.

In BioAlvaro/ProteoMS: Quality Control of Protemics Data

Description

Max intensities of the iRT peptides in each sample.

Usage

PlotiRT(
  MQCombined,
  show_calibrated_rt = FALSE,
  tolerance = 0.001,
  plots_per_page = 5
)

Arguments

MQCombined	Object list containing all the files from the MaxQuant output. It is the result from using make_MQCombined.
show_calibrated_rt	If TRUE, it will also show the calibrated retention time of each iRT peptide. By default = FALSE.
tolerance	Error maximum to find the iRT peptides by m/z value. by default is 0.001.
plots_per_page	Establish the maximum number of plots per page.

Value

A plot showing the iRT peptide in each sample vs the Retention time.

Examples

MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotiRT(MQCombined)

BioAlvaro/ProteoMS documentation built on Jan. 12, 2022, 9:46 a.m.