PlotProteaseSpecificity: Protease Specificity
In BioAlvaro/ProteoMS: Quality Control of Protemics Data

Description Usage Arguments Value Examples

View source: R/PlotProteaseSpecificity.R

Protease Specificity

PlotProteaseSpecificity(
  MQCombined,
  palette = "Set2",
  plots_per_page = 5,
  tabular_output = FALSE
)

`MQCombined`	Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`palette`	The palette from the Package RColorBrewer. By default is 'Set2'.
`plots_per_page`	Establish the maximum number of plots per page.
`tabular_output`	If true a table with the information will be the output.

Two plots per sample: Peptide length distribution and the number of missed enzymatic cleavages.

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MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotProteaseSpecificity(MQCombined)