ReportTables: Report Tables with summary data

In BioAlvaro/ProteoMS: Quality Control of Protemics Data

Description

Report Tables with summary data

Usage

ReportTables(
  MQCombined,
  long_names = FALSE,
  sep_names = NULL,
  log_base = 2,
  intensity_type = "Intensity"
)

Arguments

MQCombined	The directory to the "combined" folder where the MaxQuant results are stored.
long_names	If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.
sep_names	If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.
log_base	The logarithmic scale for the intensity. Default is 2.
intensity_type	The type of intensity. Values: 'Intensity' or 'LFQ'.

Value

A list with four tables are generated: - Protein Information - Intensity Information - Peptide Charge Information - Peptide hydrophobicity Information

Examples

MQPathCombined <- system.file('extdata/combined/', package = 'MQmetrics')
MQCombined <- make_MQCombined(MQPathCombined)
ReportTables(MQCombined)

BioAlvaro/ProteoMS documentation built on Jan. 12, 2022, 9:46 a.m.