PlotPCA: Principal Component Analysis of the Intensity values.
In BioAlvaro/ProteoMS: Quality Control of Protemics Data
Description
Usage
Arguments
Value
Examples
Description
Principal Component Analysis of the Intensity values.
Usage
1
Arguments
MQCombined
Object list containing all the files from the MaxQuant
output. It is the result from using make_MQCombined.
intensity_type
The type of intensity. Values: 'Intensity' or 'LFQ'.
palette
The palette from the Package RColorBrewer. By default is
'Set2'.
Default is Intensity.
Value
A PCA plot of the Intesities of all the samples.
Examples
1
2
3
MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPCA(MQCombined)
BioAlvaro/ProteoMS documentation built on Jan. 12, 2022, 9:46 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Principal Component Analysis of the Intensity values.
Usage
1 |
Arguments
MQCombined |
Object list containing all the files from the MaxQuant
output. It is the result from using |
intensity_type |
The type of intensity. Values: 'Intensity' or 'LFQ'. |
palette |
The palette from the Package RColorBrewer. By default is 'Set2'. Default is Intensity. |
Value
A PCA plot of the Intesities of all the samples.
Examples
1 2 3 | MQPathCombined <- system.file("extdata/combined/", package = "MQmetrics")
MQCombined <- make_MQCombined(MQPathCombined)
PlotPCA(MQCombined)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.