PlotIsotopePattern: Plot Isotope Pattern and Isotope Pattern Sequenced
In BioAlvaro/ProteoMS: Quality Control of Protemics Data

Description Usage Arguments Value Examples

Plot Isotope Pattern and Isotope Pattern Sequenced

PlotIsotopePattern(
  MQCombined,
  long_names = FALSE,
  sep_names = NULL,
  position_dodge_width = 1,
  palette = "Set2"
)

`MQCombined`	Object list containing all the files from the MaxQuant output. It is the result from using `make_MQCombined`.
`long_names`	If TRUE, samples having long names will be considered, and the name will be split by sep_names. By default = FALSE.
`sep_names`	If long_names is TRUE, sep_names has to be selected. Samples names will be split. By default is NULL.
`position_dodge_width`	Position of the columns within each others.
`palette`	The palette from the Package RColorBrewer. By default is 'Set2'.

Returns a plot Isotope Pattern and Isotope Pattern Sequenced.

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MQPathCombined <- system.file('extdata/combined/', package = 'MQmetrics')
MQCombined <- make_MQCombined(MQPathCombined)
PlotIsotopePattern(MQCombined)