integrateBiopax: Integrate two BioPAX OWL files (DEPRECATED)

In BioPAX/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons

Integrate two BioPAX OWL files (DEPRECATED)

Description

This function merges two BioPAX OWL files

Usage

integrateBiopax(inputFile1, inputFile2, outputFile = NULL)

Arguments

inputFile1	a string of the name of the input BioPAX OWL file
inputFile2	a string of the name of the input BioPAX OWL file
outputFile	a string of the name of the output integrated BioPAX OWL file

Details

This method is deprecated. Use mergeBiopax instead.

Value

an XMLInternalDocument representing a BioPAX OWL file

See Also

mergeBiopax

Examples

outFile <- tempfile()
results <- integrateBiopax(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr"), 
  system.file("extdata", "dna_replication.owl", package="paxtoolsr"), 
  outFile) 

BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.