toSif: Convert a BioPAX OWL file to SIF
In BioPAX/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons
toSif R Documentation
Convert a BioPAX OWL file to SIF
Description
Convert a BioPAX OWL file to a binary SIF file
Usage
toSif(inputFile, outputFile = NULL)
Arguments
inputFile
a string of the name of the input BioPAX OWL file
outputFile
a string of the name of the output SIF file (Optional)
Details
Information on SIF conversion is provided on the Pathway Commons
site: http://www.pathwaycommons.org/pc2/
Value
see readSif()
Examples
outFile <- tempfile()
results <- toSif(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr"),
outFile)
BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.
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| toSif | R Documentation |
Convert a BioPAX OWL file to SIF
Description
Convert a BioPAX OWL file to a binary SIF file
Usage
toSif(inputFile, outputFile = NULL)
Arguments
inputFile |
a string of the name of the input BioPAX OWL file |
outputFile |
a string of the name of the output SIF file (Optional) |
Details
Information on SIF conversion is provided on the Pathway Commons site: http://www.pathwaycommons.org/pc2/
Value
see readSif()
Examples
outFile <- tempfile()
results <- toSif(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr"),
outFile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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