toSif: Convert a BioPAX OWL file to SIF

View source: R/toSif.R

toSifR Documentation

Convert a BioPAX OWL file to SIF

Description

Convert a BioPAX OWL file to a binary SIF file

Usage

toSif(inputFile, outputFile = NULL)

Arguments

inputFile

a string of the name of the input BioPAX OWL file

outputFile

a string of the name of the output SIF file (Optional)

Details

Information on SIF conversion is provided on the Pathway Commons site: http://www.pathwaycommons.org/pc2/

Value

see readSif()

Examples

  
outFile <- tempfile()
results <- toSif(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr"), 
  outFile) 
  

BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.