splitSifnxByPathway: Splits SIFNX entries into individual pathways
In BioPAX/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons
View source: R/splitSifnxByPathway.R
splitSifnxByPathway R Documentation
Splits SIFNX entries into individual pathways
Description
Splits SIFNX entries into individual pathways
Usage
splitSifnxByPathway(edges, parallel = FALSE)
Arguments
edges
a data.frame with SIF content with the additional column "PATHWAY_NAMES".
"PATHWAY_NAMES" should include pathway names delimited with a semi-colon: ";".
parallel
a boolean that will parallelize the process; requires foreach/doSNOW/parallel packages
Details
This method can be slow; ~1.5 minutes for 150K+ rows.
Has a parallelized method to speed things up.
Value
a list of where each entry is a vector of row indicies for a given pathway
BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.
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View source: R/splitSifnxByPathway.R
| splitSifnxByPathway | R Documentation |
Splits SIFNX entries into individual pathways
Description
Splits SIFNX entries into individual pathways
Usage
splitSifnxByPathway(edges, parallel = FALSE)
Arguments
edges |
a data.frame with SIF content with the additional column "PATHWAY_NAMES". "PATHWAY_NAMES" should include pathway names delimited with a semi-colon: ";". |
parallel |
a boolean that will parallelize the process; requires foreach/doSNOW/parallel packages |
Details
This method can be slow; ~1.5 minutes for 150K+ rows. Has a parallelized method to speed things up.
Value
a list of where each entry is a vector of row indicies for a given pathway
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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