splitSifnxByPathway: Splits SIFNX entries into individual pathways

View source: R/splitSifnxByPathway.R

splitSifnxByPathwayR Documentation

Splits SIFNX entries into individual pathways

Description

Splits SIFNX entries into individual pathways

Usage

splitSifnxByPathway(edges, parallel = FALSE)

Arguments

edges

a data.frame with SIF content with the additional column "PATHWAY_NAMES". "PATHWAY_NAMES" should include pathway names delimited with a semi-colon: ";".

parallel

a boolean that will parallelize the process; requires foreach/doSNOW/parallel packages

Details

This method can be slow; ~1.5 minutes for 150K+ rows. Has a parallelized method to speed things up.

Value

a list of where each entry is a vector of row indicies for a given pathway


BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.