mergeBiopax: Merges two BioPAX OWL files

In BioPAX/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons

Merges two BioPAX OWL files

Description

This function merges two BioPAX OWL files

Usage

mergeBiopax(inputFile1, inputFile2, outputFile = NULL)

Arguments

inputFile1	a string of the name of the input BioPAX OWL file
inputFile2	a string of the name of the input BioPAX OWL file
outputFile	a string of the name of the output merged BioPAX OWL file (Optional)

Details

Only entities that share IDs will be merged. No additional merging occurs on cross-references. Merging may result in warning messages caused as a result of redundant actions being checked against by the Java library; these messages may be ignored.

Value

an XMLInternalDocument representing a BioPAX OWL file

Examples

   
outFile <- tempfile()
results <- mergeBiopax(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
                       package="paxtoolsr"), 
                       system.file("extdata", "dna_replication.owl", 
                       package="paxtoolsr"), 
                       outFile) 

BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.