toLevel3: Convert a PSIMI or older BioPAX OWL file to BioPAX Level 3

In BioPAX/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons

Convert a PSIMI or older BioPAX OWL file to BioPAX Level 3

Description

This file will convert PSIMI or older BioPAX objects to BioPAX Level 3

Usage

toLevel3(inputFile, outputFile = NULL)

Arguments

inputFile	a string of the name of the input file
outputFile	a string of the name of the output BioPAX OWL file

Value

an XMLInternalDocument representing a BioPAX OWL file

Examples

inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr")
outFile <- tempfile()
results <- toLevel3(inputFile, outFile) 

BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.