summarizeSif: Summarize a SIF Network
In BioPAX/paxtoolsr: Access Pathways from Multiple Databases Through BioPAX and Pathway Commons
summarizeSif R Documentation
Summarize a SIF Network
Description
Summarize a SIF Network
Usage
summarizeSif(sif)
Arguments
sif
a binary SIF as a data.frame with three columns:
"PARTICIPANT_A", "INTERACTION_TYPE", "PARTICIPANT_B"
Value
a list containing a count of the unique genes in the SIF and counts for the interaction types in the network
Examples
results <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
summarizeSif(results)
BioPAX/paxtoolsr documentation built on Jan. 31, 2023, 4:22 a.m.
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| summarizeSif | R Documentation |
Summarize a SIF Network
Description
Summarize a SIF Network
Usage
summarizeSif(sif)
Arguments
sif |
a binary SIF as a data.frame with three columns: "PARTICIPANT_A", "INTERACTION_TYPE", "PARTICIPANT_B" |
Value
a list containing a count of the unique genes in the SIF and counts for the interaction types in the network
Examples
results <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
summarizeSif(results)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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