Files in Bioconductor/GenomicFeatures

Query the gene models of a given organism/assembly

R/FeatureDb-class.R R/TxDb-SELECT-helpers.R R/TxDb-class.R R/TxDb-schema.R R/coordinate-mapping-methods.R R/coverageByTranscript.R R/exonicParts.R R/extendExonsIntoIntrons.R R/extractTranscriptSeqs.R R/extractUpstreamSeqs.R R/features.R R/getPromoterSeq-methods.R R/id2name.R R/makeFeatureDbFromUCSC.R R/makeTxDb.R R/makeTxDbFromBiomart.R R/makeTxDbFromEnsembl.R R/makeTxDbFromGFF.R R/makeTxDbFromGRanges.R R/makeTxDbFromUCSC.R R/makeTxDbPackage.R R/mapIdsToRanges.R R/microRNAs.R R/nearest-methods.R R/proteinToGenome.R R/select-methods.R R/transcriptLengths.R R/transcriptLocs2refLocs.R R/transcripts.R R/transcriptsBy.R R/transcriptsByOverlaps.R R/utils.R R/zzz.R README.md inst/unitTests/test_TxDb_seqinfo.R inst/unitTests/test_coordinate-mapping-methods.R inst/unitTests/test_exonicParts.R inst/unitTests/test_getPromoterSeq-methods.R inst/unitTests/test_makeIdsForUniqueDataFrameRows.R inst/unitTests/test_mapIdsToRanges.R inst/unitTests/test_nearest-methods.R inst/unitTests/test_select-methods.R inst/unitTests/test_transcriptLengths.R inst/unitTests/test_transcripts.R inst/unitTests/test_transcriptsBy.R inst/unitTests/test_transcriptsByOverlaps.R man/FeatureDb-class.Rd man/TxDb-class.Rd man/as-format-methods.Rd man/coordinate-mapping-methods.Rd man/coverageByTranscript.Rd man/exonicParts.Rd man/extendExonsIntoIntrons.Rd man/extractTranscriptSeqs.Rd man/extractUpstreamSeqs.Rd man/features.Rd man/getPromoterSeq-methods.Rd man/id2name.Rd man/makeFeatureDbFromUCSC.Rd man/makeTxDb.Rd man/makeTxDbFromBiomart.Rd man/makeTxDbFromEnsembl.Rd man/makeTxDbFromGFF.Rd man/makeTxDbFromGRanges.Rd man/makeTxDbFromUCSC.Rd man/makeTxDbPackage.Rd man/mapIdsToRanges.Rd man/mapRangesToIds.Rd man/microRNAs.Rd man/nearest-methods.Rd man/proteinToGenome.Rd man/select-methods.Rd man/transcriptLengths.Rd man/transcriptLocs2refLocs.Rd man/transcripts.Rd man/transcriptsBy.Rd man/transcriptsByOverlaps.Rd tests/run_unitTests.R vignettes/GenomicFeatures.Rmd