FindAllInteractionPrograms | R Documentation |
Find all interaction programs in a multi-sample dataset
FindAllInteractionPrograms(seu, group.by = NULL, sim_threshold = 0.15, ...)
seu |
A Seurat object |
group.by |
Meta.data column name defining samples into which object should be split. Interaction programs will be found for each unique value in this column. |
sim_threshold |
During module merging from different samples, the Jaccard overlap index threshold above which modules will be merged. Default: 0.15 |
... |
Additional arguments passed to |
Returns a list of length 4 with ligand-receptor covariance matrices, TOMs, modules, and intramodular connectivity for each sample.
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