crGeneSig: Create single-cell gene signature

In BlishLab/scriabin: Single-cell resolved interaction analysis through binning

Create single-cell gene signature

Description

Create single-cell gene signature

Usage

crGeneSig(seu, variant_features = NULL, quantile_threshold = 0.1)

Arguments

seu	A seurat object
variant_features	Character vector of variable genes returned by IDVariantGenes
quantile_threshold	Genes a distance less than this threshold will be considered part of the gene signature

Value

A list n cells long with nearest gene-cell distances for each cell

Examples

## Not run: 
ranked_genes <- crGeneSig(seu, variant_features = var_genes)

## End(Not run)

BlishLab/scriabin documentation built on July 5, 2023, 1:14 a.m.