GeneratePrioritizedInteractome: Title

In BlishLab/scriabin: Single-cell resolved interaction analysis through binning

Title

Description

Title

Usage

GeneratePrioritizedInteractome(
  seu,
  ranked_genes = ranked_genes,
  cluster_results = clusters,
  send_cluster = NULL,
  rec_cluster = NULL,
  ident.label = NULL,
  use_clusters = T,
  send_cells = NULL,
  rec_cells = NULL,
  cell.type.calls = "celltype.l2",
  assay.use = "SCT",
  slot.use = "data",
  group.by = "time.orig",
  nichenet_results,
  pearson.cutoff = 0.075,
  database = "OmniPath"
)

Arguments

database

BlishLab/scriabin documentation built on July 5, 2023, 1:14 a.m.