removeLibdateByReplicate: Remove the libraryDate effects from KN99 dds objs
In BrentLab/brentlabRnaSeqTools: Management/QC for brentlab RNAseq data
removeLibdateByReplicate R Documentation
Remove the libraryDate effects from KN99 dds objs
Description
Remove the libraryDate effects from KN99 dds objs
Usage
removeLibdateByReplicate(dds, replicate_colname)
Arguments
dds
a deseq data object with either a formula or matrix in the design
note that if libraryDate is not included in the design, then this function
doesn't remove anything
replicate_colname
which column to use as the replicate grouping. If
your replicates are described by more than 1 column, for this purpose,
group them to create 1 column. does not need to be the same as what is in
the design slot of the dds
Value
a list with both the unremoved and removed effect rle and summary
BrentLab/brentlabRnaSeqTools documentation built on Aug. 20, 2023, 9:22 a.m.
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| removeLibdateByReplicate | R Documentation |
Remove the libraryDate effects from KN99 dds objs
Description
Remove the libraryDate effects from KN99 dds objs
Usage
removeLibdateByReplicate(dds, replicate_colname)
Arguments
dds |
a deseq data object with either a formula or matrix in the design note that if libraryDate is not included in the design, then this function doesn't remove anything |
replicate_colname |
which column to use as the replicate grouping. If your replicates are described by more than 1 column, for this purpose, group them to create 1 column. does not need to be the same as what is in the design slot of the dds |
Value
a list with both the unremoved and removed effect rle and summary
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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