setPerturbedLociToZero: Zero out perturbed expression
In BrentLab/brentlabRnaSeqTools: Management/QC for brentlab RNAseq data
View source: R/SetPerturbedLociToZero.R
setPerturbedLociToZero R Documentation
Zero out perturbed expression
Description
set expression of the gene in genotype1 for a particular
sample to zero
Usage
setPerturbedLociToZero(object)
Arguments
object
a deseq data set column genotype1 in colData
(a brentlabRnaSeqSet also works)
Note
the error handling isn't good here yet – it will error if there is a
perturbed loci that is not in the rownames of the object (eg, if it is filtered
due to low expression)
BrentLab/brentlabRnaSeqTools documentation built on Aug. 20, 2023, 9:22 a.m.
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View source: R/SetPerturbedLociToZero.R
| setPerturbedLociToZero | R Documentation |
Zero out perturbed expression
Description
set expression of the gene in genotype1 for a particular sample to zero
Usage
setPerturbedLociToZero(object)
Arguments
object |
a deseq data set column genotype1 in colData (a brentlabRnaSeqSet also works) |
Note
the error handling isn't good here yet – it will error if there is a perturbed loci that is not in the rownames of the object (eg, if it is filtered due to low expression)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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