scCNplot: scCN plot

In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data

scCN plot

Description

scCN plot

Usage

scCNplot(
  S_scCN,
  G_scCN,
  CN_limit = 4,
  Coordinates = NULL,
  rasterized_heatmap = F,
  heatmap_color_palette = c("viridis", "inferno", "magma", "plasma", "cividis"),
  manual_colors = NULL
)

Arguments

S_scCN,	S-phase scCN dataframe created by Replication_state (optionally filtered)
G_scCN,	G1/G2-phase scCN dataframe created by Replication_state (optionally filtered)
CN_limit,	Max number of different level to visulize from the lowest one.
Coordinates,	data frame containing chr,start and end position (multiple regions allowed, optional)
rasterized_heatmap,	logic: whether or not the heatmap should be rasterized
heatmap_color_palette,	palette choice (viridis, inferno, magma, plasma or cividis)
manual_colors,	manual colors, if provided they overwrite heatmap_color_palette

Value

plot

CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.