scRTplot: scRT plot of a region of interest

In CL-CHEN-Lab/User_interface_for_Kronos_scRT: R-package and Shiny App interface for the analysis of single cell replication timing data

scRT plot of a region of interest

Description

scRT plot of a region of interest

Usage

scRTplot(
  pseudoBulkRT,
  S_scCN,
  Coordinates,
  Plot = "scRT",
  rasterized_heatmap = F,
  heatmap_colors = NULL,
  sample_colors = NULL
)

Arguments

pseudoBulkRT,	pseudo-Bulk RT that can be rebinned with a reference RT (generated by RebinRT)
S_scCN,	S-phase scCN dataframe created by Replication_state (optionally filtered)
Coordinates,	named list containing chr,start and end position
rasterized_heatmap,	logic: whether or not the heatmap should be rasterized
heatmap_colors,	a vector of colors for the heatmap.(Replicated/min value and Unreplicated/max value)
sample_colors,	a vector, named or not, for the samples

Value

plot

CL-CHEN-Lab/User_interface_for_Kronos_scRT documentation built on Aug. 1, 2022, 2:08 p.m.