dataPreprocess: Function "dataPreprocess"

In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

Description

This function preprocesses clinical data and gene expression matrix.

Usage

dataPreprocess(dataInfo, dataMatrix, pcg_ense, condition, attr1, attr2,
  type1, type2, Order)

Arguments

dataInfo	a data frame which contains clinical information of data
dataMatrix	a matrix consisting of gene expression counts
pcg_ense	a character vector of protein-coding ensembl gene IDs
condition	a character vector composed of all different group conditions
attr1	a string character indicating the column name for "Sample ID" in the clinical data
attr2	a string character indicating the desired group name in the clinical data
type1	a string character representing one group condition
type2	a string character representing the other group condition
Order	a logical variable indicating whether or not to use decreasing order to resort the data information

Value

a list consisting of numbers of each group condition, processed clinical data information and ready-to-use gene expression matrix.

Coraline66/RNASeqAnalysis documentation built on Nov. 25, 2019, 8:03 a.m.