plotNES: Function "plotNES"

In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

Description

This function plots a comparison pathway barplot for selected cohorts and chosen gene sets.

Usage

plotNES(gseaRes, N, gs, fdr, s, v, h, W, H, Date)

Arguments

gseaRes	a list of gsea results for different cohorts
N	a numeric variable indicating the number of cohorts being used
gs	a character variable indicating the name of genesets used
fdr	a numeric variable indicating the FDR cutoff value
s	a numeric variable representing the size of labels used in the plot
v	a numeric variable representing the value of vjust, vertical position of the labels
h	a numeric variable representing the value of hjust, horizontal position of the labels
W	a numeric variable representing the width of the figure
H	a numeric variable representing the height of the figure
Date	a character variable returned from Sys.Date()

Value

a list of ggplot object of the comparison plot of direction-consistent pathways, up and down-regulated pathways

Coraline66/RNASeqAnalysis documentation built on Nov. 25, 2019, 8:03 a.m.