geneEXP: Function "geneExp"

In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

Description

This function constructs expression set for GSEA and ssGSEA

Usage

geneEXP(res_anno, geneEX, condition, N, n1, n2)

Arguments

res_anno	a data frame with the result of DESeq along with gene annotation
geneEX	normalized gene expression matrix based on ensembl IDs
condition	a string character representing the group condition
N	a numeric variable indicating the number of total samples
n1	a numeric variable indicating the number of samples for one of the group condition
n2	a numeric variable indicating the number of samples for the other group condition

Value

a gene expression object with matrix based on entrezgene IDs

Coraline66/RNASeqAnalysis documentation built on Nov. 25, 2019, 8:03 a.m.