ssgseaPlot: Function "ssgseaPlot"

In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

Description

This function performs single sample GSEA

Usage

ssgseaPlot(ssgsea, condition, n1, n2, data_info, p, attr1, attr2,
  conditionI)

Arguments

ssgsea	an ExpressionSet object containing the result of ssGSEA
condition	a string character representing the group condition
n1	a numeric variable indicating the number of samples for one of the group condition
n2	a numeric variable indicating the number of samples for the other group condition
data_info	data frame containing clinical information
p	a numeric variable indicating the p value cutoff of wilcoxon test
attr1	a string character indicating the column names in clinical file for SampleID
attr2	a string character indicating the column containing group information in clinical data
conditionI	a character vector of alternative group condition

Value

a list of plots and p values of wilcoxon test

Coraline66/RNASeqAnalysis documentation built on Nov. 25, 2019, 8:03 a.m.