ebseq: Function "ebseq"
In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

This function Perform Differential Gene Expression Analysis using EBSeq.

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ebseq(type, data, condition, n1, n2, N = 5, fdr = 0.05,
  method = "robust", fdrmethod = "hard", fc = 0.7, Qcut = 0,
  tt = 3)

`type`	a character type variable indicating whether to perform "Gene-level analysis" or "Isoform-level analysis".
`data`	either an unnormalized counts matrix for "Gene-level analysis", or a list for "Isoform-level analysis".
`condition`	a length two variable containing two conditions.
`n1`	an integer indicating the number of samples in the first condition.
`n2`	an integer indicating the number of samples in the second condition.
`N`	an integer indicating the number of iterations in EB Test.
`fdr`	a numeric variable indicating the target FDR in EB Test.
`method`	"robust" or "classic". Refer to GetDEResults() in EBSeq. Default is "robust".
`fdrmethod`	"hard" or "soft". Refer to GetDEResults() in EBSeq. Default is "hard".
`fc`	Threshold for the fold change statistics.Default is 0.7.
`Qcut`	Transcrips with 100 th quantile <= Qcut will be removed before testing. Default is 0.
`tt`	The number of uncertainty groups the user wish to define. Default is 3.