deseq2Res: Function "deseq2Res"

In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

Description

This function saves the differential gene expression analysis results and retrieves raw and normalized counts matrices.

Usage

deseq2Res(countsmatrix, res, geneSymbol, index, group, dds, Date)

Arguments

countsmatrix	raw counts matrix
res	the result data frame from DESeq2
geneSymbol	a data frame with all gene annotation information
index	a character used to merge the result and gene annotation file
group	a string character indicating the group condition
dds	a DESeq data object retrieved from DESeq2 used for accessing normalized counts matrix
Date	a Date object obtained from Sys.Date

Value

a list consisting of the sorted DESeq result, differentially expressed gene lists, raw and normalized counts matrices.

Coraline66/RNASeqAnalysis documentation built on Nov. 25, 2019, 8:03 a.m.