gseaII: Function "gseaII"

In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

Description

This function performs GSEA analysis.

Usage

gseaII(res_anno, geneSet, attr1, attr2, attr3, Min, Max)

Arguments

res_anno	a data frame with the result of DESeq along with gene annotation
geneSet	a gene set list, consisting of entrezgene IDs
attr1	a character variable indicating the based on gene symbols in the input matrix
attr2	the name of column representing p values in the input matrix
attr3	the name of column representing log2FoldChange in the input matrix
Min	a numeric variable representing the minimum size of pathway accepted for GSEA
Max	a numeric variable representing the maximum size of pathway accepted for GSEA

Value

a list of gene rank based on entrezgene ID, result of GSEA.

Coraline66/RNASeqAnalysis documentation built on Nov. 25, 2019, 8:03 a.m.