deseq2: Function "deseq2"

In Coraline66/RNASeqAnalysis: Perform RNASeq Data Analysis

Description

This function Perform Differential Gene Expression Analysis using DESeq2.

Usage

deseq2(condition, n1, n2, N, countsmatrix, M)

Arguments

condition	a character vector composed of all different group conditions
n1	a numeric variable indicating the number of samples for one of the group condition
n2	a numeric variable indicating the number of samples for the other group condition
N	a numeric variable indicating the threshold for filtering low counts genes
countsmatrix	gene expression matrix with raw counts
M	a numeric variable indicating the number of cores for parallel computing

Value

a list consisting of the DESeq data object and a data frame with all differential gene expression analysis results.

Coraline66/RNASeqAnalysis documentation built on Nov. 25, 2019, 8:03 a.m.