plotConnectionCircos: plotConnectionCircos

In EngeLab/CIMseq: CIMseq is a software suite for analysis of scRNAseq data that has been produced using the cellular interactions by multiplet sequencing method

Description

Subtitle

Usage

plotConnectionCircos(connections, ...)

## S4 method for signature 'CIMseqConnections'
plotConnectionCircos(
  connections,
  classOrder = NULL,
  label.cex = 1,
  legend = TRUE,
  pal = colorRampPalette(c("grey95", viridis::viridis(1)))(120)[40:120],
  nonSigCol = "grey95",
  h.ratio = 0.5,
  drawFractions = T,
  ...
)

Arguments

connections	CIMseqConnections; A CIMseqConnections object.
...	additional arguments to pass on.
classOrder	character; Order of the cell types / classes on the circos.
label.cex	numeric; Vector of length 1 between [0, 1] indicating the size of the cell type labels.
legend	logical; indicates if the legends should be plotted.
pal	character; A vector including the colour pallete for the score colours.
nonSigCol	character; Vector of length 1 indicating the colours for non-significant connections.
h.ratio	numeric; Vector of length 1 indicating the curvature of links
drawFraction	logical; Vector of length 1 indicating the colours for non-significant connections.

Details

Description

Value

A ggplot object.

Author(s)

Martin Enge

EngeLab/CIMseq documentation built on Jan. 25, 2022, 5 a.m.