summary-gtypes-method: Summarize gtypes Object

In EricArcher/strataG: Summaries and Population Structure Analyses of Genetic Data

Summarize gtypes Object

Description

Generate a summary of a gtypes object.

Usage

## S4 method for signature 'gtypes'
summary(object, ...)

Arguments

object	a gtypes object.
...	other arguments (ignored).

Value

a list with the following elements:

num.ind

number of individuals

num.loc

number of loci

num.strata

number of strata

unstratified

number of unstratified samples

schemes

names of stratification schemes

allele.freqs

a list with tables of allele frequencies by strata

strata.smry

a by-strata data.frame summarizing haplotypes or loci

locus.smry

a data.frame summarizing each locus for non-haploid objects, NULL for haploid objects

seq.smry

a summary of the sequence length and base frequencies

Author(s)

Eric Archer [e-mail]

EricArcher/strataG documentation built on Feb. 12, 2023, 4:11 a.m.