tajimasD: Tajima's D
In EricArcher/strataG: Summaries and Population Structure Analyses of Genetic Data
tajimasD R Documentation
Tajima's D
Description
Calculate Tajima's D for a set of sequences to test
for selection.
Usage
tajimasD(x, CI = 0.95)
Arguments
x
set of DNA sequences or a haploid gtypes
object with sequences.
CI
desired central confidence interval.
Value
A named vector with the estimate for D and
the p.value that it is different from 0.
Author(s)
Eric Archer eric.archer@noaa.gov
References
Tajima, F. 1989. Statistical method for testing the neutral
mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
Examples
data(dolph.seqs)
tajimasD(dolph.seqs)
EricArcher/strataG documentation built on Feb. 12, 2023, 4:11 a.m.
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| tajimasD | R Documentation |
Tajima's D
Description
Calculate Tajima's D for a set of sequences to test for selection.
Usage
tajimasD(x, CI = 0.95)
Arguments
x |
set of DNA sequences or a haploid gtypes object with sequences. |
CI |
desired central confidence interval. |
Value
A named vector with the estimate for D and
the p.value that it is different from 0.
Author(s)
Eric Archer eric.archer@noaa.gov
References
Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
Examples
data(dolph.seqs) tajimasD(dolph.seqs)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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