MiDAS_tut_object: MiDAS tutorial MiDAS object

In Genentech/midasHLA: R package for immunogenomics data handling and association analysis

MiDAS tutorial MiDAS object

Description

Example MiDAS object created with data used in MiDAS tutorial: MiDAS_tut_HLA, MiDAS_tut_KIR, MiDAS_tut_pheno. Used in code examlpes and unit tests.

Usage

MiDAS_tut_object

Format

MiDAS object with following experiments defined:

hla_alleles

SummarizedExperiment with 447 rows and 1000 columns

hla_aa

SummarizedExperiment with 1223 rows and 1000 columns

hla_g_groups

SummarizedExperiment with 46 rows and 1000 columns

hla_supertypes

SummarizedExperiment with 12 rows and 1000 columns

hla_NK_ligands

SummarizedExperiment with 5 rows and 1000 columns

kir_genes

SummarizedExperiment with 16 rows and 1000 columns

kir_haplotypes

SummarizedExperiment with 6 rows and 1000 columns

hla_kir_interactions

SummarizedExperiment with 29 rows and 1000 columns

hla_divergence

matrix with 4 rows and 1000 columns

hla_het

SummarizedExperiment with 9 rows and 1000 columns

Genentech/midasHLA documentation built on Feb. 12, 2024, 9:38 a.m.