Files in GrahamHamilton/pipelineTools
Pipeline Tools for NGS Sequence Analysis Pipelines

.DS_Store
.Rbuildignore
._.DS_Store
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/.DS_Store
R/._.DS_Store
R/prepare_samples.R R/prepare_solo_samples.R R/run_bcftools.R R/run_bedtools.R R/run_blast.R R/run_bowtie.R R/run_bowtie2.R R/run_bwa.R R/run_centrifuge.R R/run_cutadapt.R R/run_cuteSV.R R/run_deeptools.R R/run_fastp.R R/run_fastq_screen.R R/run_fastqc.R R/run_flye.R R/run_freebayes.R R/run_gatk.R R/run_hisat2.R R/run_htseq_count.R R/run_kallisto.R R/run_macs.R R/run_mageck.R R/run_masurca.R R/run_minimap2.R R/run_multiqc.R R/run_nanofilt.R R/run_picard.R R/run_samtools.R R/run_seqtk.R R/run_sicer.R R/run_snpeff.R R/run_snpsift.R R/run_star.R R/run_stringtie.R R/run_umitools.R R/run_vcf_index.R R/run_vcftools.R R/save_pheatmap.R README.md man/prepare_samples.Rd man/prepare_solo_samples.Rd man/run_bcftools.Rd man/run_bedtools.Rd man/run_blast.Rd man/run_bowtie.Rd man/run_bowtie2.Rd man/run_bwa.Rd man/run_centrifuge.Rd man/run_cutadapt.Rd man/run_cuteSV.Rd man/run_deeptools.Rd man/run_fastp.Rd man/run_fastq_screen.Rd man/run_fastqc.Rd man/run_flye.Rd man/run_freebayes.Rd man/run_gatk.Rd man/run_hisat2.Rd man/run_htseq_count.Rd man/run_kallisto.Rd man/run_macs.Rd man/run_mageck.Rd man/run_masurca.Rd man/run_minimap2.Rd man/run_multiqc.Rd man/run_nanofilt.Rd man/run_picard.Rd man/run_samtools.Rd man/run_seqtk.Rd man/run_sicer.Rd man/run_snpeff.Rd man/run_snpsift.Rd man/run_star.Rd man/run_stringtie.Rd man/run_umitools.Rd man/run_vcf_index.Rd man/run_vcftools.Rd man/save_pheatmap_png.Rd
pipelineTools.Rproj
run.sh
vignettes/.gitignore
vignettes/PipelineTools.Rmd
GrahamHamilton/pipelineTools documentation built on Dec. 8, 2024, 3:53 p.m.