API for Granoia/splatter-mod
Simple Simulation of Single-cell RNA Sequencing Data
| Global functions | |
|---|---|
| BASiCSEstimate | Man page |
| BASiCSEstimate.SingleCellExperiment | Man page |
| BASiCSEstimate.matrix | Man page |
| BASiCSParams | Man page |
| BASiCSParams-class | Man page |
| BASiCSSimulate | Man page |
| Lun2Params | Man page |
| Lun2Params-class | Man page |
| LunParams | Man page |
| LunParams-class | Man page |
| MFAParams | Man page |
| MFAParams-class | Man page |
| Params | Man page |
| Params-class | Man page |
| PhenoParams | Man page |
| PhenoParams-class | Man page |
| SCDDParams | Man page |
| SCDDParams-class | Man page |
| SimpleParams | Man page |
| SimpleParams-class | Man page |
| SparseDCParams | Man page |
| SparseDCParams-class | Man page |
| SplatParams | Man page |
| SplatParams-class | Man page |
| ZINBParams | Man page |
| ZINBParams-class | Man page |
| addFeatureStats | Man page |
| addGeneLengths | Man page |
| bridge | Man page |
| bringItemsForward | Man page |
| compareSCEs | Man page |
| diffSCEs | Man page |
| expandParams | Man page |
| expandParams,BASiCSParams-method | Man page |
| expandParams,LunParams-method | Man page |
| expandParams,SplatParams-method | Man page |
| getLNormFactors | Man page |
| getParam | Man page |
| getParam,Params-method | Man page |
| getParams | Man page |
| getPathOrder | Man page |
| listSims | Man page |
| logistic | Man page |
| lun2Estimate | Man page |
| lun2Estimate.SingleCellExperiment | Man page |
| lun2Estimate.matrix | Man page |
| lun2Simulate | Man page |
| lunEstimate | Man page |
| lunEstimate.SingleCellExperiment | Man page |
| lunEstimate.matrix | Man page |
| lunSimulate | Man page |
| makeCompPanel | Man page |
| makeDiffPanel | Man page |
| makeOverallPanel | Man page |
| mfaEstimate | Man page |
| mfaEstimate.SingleCellExperiment | Man page |
| mfaEstimate.matrix | Man page |
| mfaSimulate | Man page |
| newBASiCSParams | Man page |
| newLun2Params | Man page |
| newLunParams | Man page |
| newMFAParams | Man page |
| newParams | Man page |
| newPhenoParams | Man page |
| newSCDDParams | Man page |
| newSimpleParams | Man page |
| newSparseDCParams | Man page |
| newSplatParams | Man page |
| newZINBParams | Man page |
| phenoEstimate | Man page |
| phenoEstimate.SingleCellExperiment | Man page |
| phenoEstimate.matrix | Man page |
| phenoSimulate | Man page |
| rbindMatched | Man page |
| scDDEstimate | Man page |
| scDDEstimate.SingleCellExperiment | Man page |
| scDDEstimate.default | Man page |
| scDDEstimate.matrix | Man page |
| scDDSimulate | Man page |
| setParam | Man page |
| setParam,BASiCSParams-method | Man page |
| setParam,Lun2Params-method | Man page |
| setParam,LunParams-method | Man page |
| setParam,Params-method | Man page |
| setParam,PhenoParams-method | Man page |
| setParam,SCDDParams-method | Man page |
| setParam,SplatParams-method | Man page |
| setParam,ZINBParams-method | Man page |
| setParamUnchecked | Man page |
| setParamUnchecked,Params-method | Man page |
| setParams | Man page |
| setParams,Params-method | Man page |
| setParams,SplatParams-method | Man page |
| setParamsUnchecked | Man page |
| showDFs | Man page |
| showPP | Man page |
| showValues | Man page |
| simpleEstimate | Man page |
| simpleEstimate.SingleCellExperiment | Man page |
| simpleEstimate.matrix | Man page |
| simpleSimulate | Man page |
| sparseDCEstimate | Man page |
| sparseDCEstimate.SingleCellExperiment | Man page |
| sparseDCEstimate.matrix | Man page |
| sparseDCSimulate | Man page |
| splatEstBCV | Man page |
| splatEstDropout | Man page |
| splatEstLib | Man page |
| splatEstMean | Man page |
| splatEstOutlier | Man page |
| splatEstimate | Man page |
| splatEstimate.SingleCellExperiment | Man page |
| splatEstimate.matrix | Man page |
| splatSimBCVMeans | Man page |
| splatSimBatchCellMeans | Man page |
| splatSimBatchEffects | Man page |
| splatSimCellMeans | Man page |
| splatSimDE | Man page |
| splatSimDropout | Man page |
| splatSimGeneMeans | Man page |
| splatSimGroupCellMeans | Man page |
| splatSimGroupDE | Man page |
| splatSimLibSizes | Man page |
| splatSimPathCellMeans | Man page |
| splatSimPathDE | Man page |
| splatSimSingleCellMeans | Man page |
| splatSimTrueCounts | Man page |
| splatSimulate | Man page |
| splatSimulateGroups | Man page |
| splatSimulatePaths | Man page |
| splatSimulateSingle | Man page |
| splatter | Man page |
| splatter-package | Man page |
| summariseDiff | Man page |
| winsorize | Man page |
| zinbEstimate | Man page |
| zinbEstimate.SingleCellExperiment | Man page |
| zinbEstimate.matrix | Man page |
| zinbSimulate | Man page |
