Files in Granoia/splatter-mod
Simple Simulation of Single-cell RNA Sequencing Data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/BASiCS-estimate.R
R/BASiCS-simulate.R
R/BASiCSParams-methods.R
R/Lun2Params-methods.R
R/LunParams-methods.R
R/MFAParams-methods.R
R/Params-methods.R
R/PhenoParams-methods.R
R/SCDDParams-methods.R
R/SCE-functions.R
R/SimpleParams-methods.R
R/SparseDCParams-methods.R
R/SplatParams-methods.R
R/ZINBParams-methods.R
R/compare.R
R/listSims.R
R/lun-estimate.R
R/lun-simulate.R
R/lun2-estimate.R
R/lun2-simulate.R
R/mfa-estimate.R
R/mfa-simulate.R
R/params-functions.R
R/pheno-estimate.R
R/pheno-simulate.R
R/scDD-estimate.R
R/scDD-simulate.R
R/simple-estimate.R
R/simple-simulate.R
R/sparseDC-estimate.R
R/sparseDC-simulate.R
R/splat-estimate.R
R/splat-simulate.R
R/splatter-package.R
R/utils.R
R/zinb-estimate.R
R/zinb-simulate.R
README.md
_pkgdown.yml
appveyor.yml
codecov.yml
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/index.html
docs/articles/splat-model.png
docs/articles/splat_params.html
docs/articles/splat_params_files/figure-html/batch-factors-1.png
docs/articles/splat_params_files/figure-html/batch-factors-2.png
docs/articles/splat_params_files/figure-html/batches-1.png
docs/articles/splat_params_files/figure-html/complex-de-1.png
docs/articles/splat_params_files/figure-html/complex-de-2.png
docs/articles/splat_params_files/figure-html/complex-de-3.png
docs/articles/splat_params_files/figure-html/de-factors-1.png
docs/articles/splat_params_files/figure-html/de-factors-2.png
docs/articles/splat_params_files/figure-html/de-prob-1.png
docs/articles/splat_params_files/figure-html/de-prob-2.png
docs/articles/splat_params_files/figure-html/groups-1.png
docs/articles/splat_params_files/figure-html/groups-2.png
docs/articles/splat_params_files/figure-html/outlier-prob-1.png
docs/articles/splat_params_files/figure-html/outlier-prob-2.png
docs/articles/splat_params_files/figure-html/paths-1.png
docs/articles/splat_params_files/figure-html/paths-2.png
docs/articles/splat_params_files/figure-html/paths-skew-1.png
docs/articles/splat_params_files/figure-html/paths-steps-1.png
docs/articles/splat_params_files/figure-html/paths-steps-2.png
docs/articles/splatter-logo-small.png
docs/articles/splatter.html
docs/articles/splatter_files/figure-html/batch-groups-1.png
docs/articles/splatter_files/figure-html/batches-1.png
docs/articles/splatter_files/figure-html/comparison-libsize-features-1.png
docs/articles/splatter_files/figure-html/comparison-means-1.png
docs/articles/splatter_files/figure-html/difference-1.png
docs/articles/splatter_files/figure-html/difference-qq-1.png
docs/articles/splatter_files/figure-html/groups-1.png
docs/articles/splatter_files/figure-html/paths-1.png
docs/articles/splatter_files/figure-html/pca-1.png
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/extra.css
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/BASiCSEstimate.html
docs/reference/BASiCSParams.html
docs/reference/BASiCSSimulate.html
docs/reference/Lun2Params.html
docs/reference/LunParams.html
docs/reference/MFAParams.html
docs/reference/Params.html
docs/reference/PhenoParams.html
docs/reference/SCDDParams.html
docs/reference/SimpleParams.html
docs/reference/SparseDCParams.html
docs/reference/SplatParams.html
docs/reference/ZINBParams.html
docs/reference/addFeatureStats.html
docs/reference/addGeneLengths.html
docs/reference/bridge.html
docs/reference/bringItemsForward.html
docs/reference/compareSCESets.html
docs/reference/compareSCEs.html
docs/reference/diffSCESets.html
docs/reference/diffSCEs.html
docs/reference/expandParams.html
docs/reference/getLNormFactors.html
docs/reference/getParam.html
docs/reference/getParams.html
docs/reference/getPathOrder.html
docs/reference/index.html
docs/reference/listSims.html
docs/reference/logistic.html
docs/reference/lun2Estimate.html
docs/reference/lun2Simulate.html
docs/reference/lunEstimate.html
docs/reference/lunSimulate.html
docs/reference/makeCompPanel.html
docs/reference/makeDiffPanel.html
docs/reference/makeOverallPanel.html
docs/reference/mfaEstimate.html
docs/reference/mfaSimulate.html
docs/reference/newParams.html
docs/reference/phenoEstimate.html
docs/reference/phenoSimulate.html
docs/reference/rbindMatched.html
docs/reference/scDDEstimate.html
docs/reference/scDDSimulate.html
docs/reference/setParam.html
docs/reference/setParamUnchecked.html
docs/reference/setParams.html
docs/reference/setParamsUnchecked.html
docs/reference/showDFs.html
docs/reference/showPP.html
docs/reference/showValues.html
docs/reference/simpleEstimate.html
docs/reference/simpleSimulate.html
docs/reference/sparseDCEstimate.html
docs/reference/sparseDCSimulate.html
docs/reference/splatEstBCV.html
docs/reference/splatEstDropout.html
docs/reference/splatEstLib.html
docs/reference/splatEstMean.html
docs/reference/splatEstOutlier.html
docs/reference/splatEstimate.html
docs/reference/splatSimBCVMeans.html
docs/reference/splatSimBatchCellMeans.html
docs/reference/splatSimBatchEffects.html
docs/reference/splatSimCellMeans.html
docs/reference/splatSimDE.html
docs/reference/splatSimDropout.html
docs/reference/splatSimGeneMeans.html
docs/reference/splatSimLibSizes.html
docs/reference/splatSimTrueCounts.html
docs/reference/splatSimulate.html
docs/reference/splatter.html
docs/reference/summariseDiff.html
docs/reference/winsorize.html
docs/reference/zinbEstimate.html
docs/reference/zinbSimulate.html
docs/sitemap.xml
environment.yml
index.md
inst/CITATION
inst/NEWS.Rd
inst/WORDLIST
man/BASiCSEstimate.Rd
man/BASiCSParams.Rd
man/BASiCSSimulate.Rd
man/Lun2Params.Rd
man/LunParams.Rd
man/MFAParams.Rd
man/Params.Rd
man/PhenoParams.Rd
man/SCDDParams.Rd
man/SimpleParams.Rd
man/SparseDCParams.Rd
man/SplatParams.Rd
man/ZINBParams.Rd
man/addFeatureStats.Rd
man/addGeneLengths.Rd
man/bridge.Rd
man/bringItemsForward.Rd
man/compareSCEs.Rd
man/diffSCEs.Rd
man/expandParams.Rd
man/getLNormFactors.Rd
man/getParam.Rd
man/getParams.Rd
man/getPathOrder.Rd
man/listSims.Rd
man/logistic.Rd
man/lun2Estimate.Rd
man/lun2Simulate.Rd
man/lunEstimate.Rd
man/lunSimulate.Rd
man/makeCompPanel.Rd
man/makeDiffPanel.Rd
man/makeOverallPanel.Rd
man/mfaEstimate.Rd
man/mfaSimulate.Rd
man/newParams.Rd
man/phenoEstimate.Rd
man/phenoSimulate.Rd
man/rbindMatched.Rd
man/scDDEstimate.Rd
man/scDDSimulate.Rd
man/setParam.Rd
man/setParamUnchecked.Rd
man/setParams.Rd
man/setParamsUnchecked.Rd
man/showDFs.Rd
man/showPP.Rd
man/showValues.Rd
man/simpleEstimate.Rd
man/simpleSimulate.Rd
man/sparseDCEstimate.Rd
man/sparseDCSimulate.Rd
man/splatEstBCV.Rd
man/splatEstDropout.Rd
man/splatEstLib.Rd
man/splatEstMean.Rd
man/splatEstOutlier.Rd
man/splatEstimate.Rd
man/splatSimBCVMeans.Rd
man/splatSimBatchCellMeans.Rd
man/splatSimBatchEffects.Rd
man/splatSimCellMeans.Rd
man/splatSimDE.Rd
man/splatSimDropout.Rd
man/splatSimGeneMeans.Rd
man/splatSimLibSizes.Rd
man/splatSimTrueCounts.Rd
man/splatSimulate.Rd
man/splatter.Rd
man/summariseDiff.Rd
man/winsorize.Rd
man/zinbEstimate.Rd
man/zinbSimulate.Rd
pkgdown/extra.css
tests/spelling.R
tests/testthat.R
tests/testthat/test-BASiCS-simulate.R
tests/testthat/test-BASiCSEstimate.R
tests/testthat/test-BASiCSParams.R
tests/testthat/test-Lun2Params.R
tests/testthat/test-LunParams.R
tests/testthat/test-MFAEstimate.R
tests/testthat/test-MFAParams.R
tests/testthat/test-Params.R
tests/testthat/test-PhenoParams.R
tests/testthat/test-SCDDParams.R
tests/testthat/test-SCE-functions.R
tests/testthat/test-SimpleParams.R
tests/testthat/test-SparseDCParams.R
tests/testthat/test-SplatParams.R
tests/testthat/test-ZINBParams.R
tests/testthat/test-compare.R
tests/testthat/test-listSims.R
tests/testthat/test-lun-simulate.R
tests/testthat/test-lun2-simulate.R
tests/testthat/test-lunEstimate.R
tests/testthat/test-mfa-simulate.R
tests/testthat/test-pheno-simulate.R
tests/testthat/test-phenoEstimate.R
tests/testthat/test-scDD-simulate.R
tests/testthat/test-simple-simulate.R
tests/testthat/test-simpleEstimate.R
tests/testthat/test-sparseDC-simulate.R
tests/testthat/test-sparseDCEstimate.R
tests/testthat/test-splat-simulate.R
tests/testthat/test-utils.R
tests/testthat/test-zinb-simulate.R
vignettes/.gitignore
vignettes/splat-model.png
vignettes/splat_params.Rmd
vignettes/splatter-logo-small.png
vignettes/splatter.Rmd
