Man pages for Granoia/splatter-mod
Simple Simulation of Single-cell RNA Sequencing Data
| addFeatureStats | Add feature statistics |
| addGeneLengths | Add gene lengths |
| BASiCSEstimate | Estimate BASiCS simulation parameters |
| BASiCSParams | The BASiCSParams class |
| BASiCSSimulate | BASiCS simulation |
| bridge | Brownian bridge |
| bringItemsForward | Bring items forward |
| compareSCEs | Compare SingleCellExperiment objects |
| diffSCEs | Diff SingleCellExperiment objects |
| expandParams | Expand parameters |
| getLNormFactors | Get log-normal factors |
| getParam | Get a parameter |
| getParams | Get parameters |
| getPathOrder | Get path order |
| listSims | List simulations |
| logistic | Logistic function |
| lun2Estimate | Estimate Lun2 simulation parameters |
| Lun2Params | The Lun2Params class |
| lun2Simulate | Lun2 simulation |
| lunEstimate | Estimate Lun simulation parameters |
| LunParams | The LunParams class |
| lunSimulate | Lun simulation |
| makeCompPanel | Make comparison panel |
| makeDiffPanel | Make difference panel |
| makeOverallPanel | Make overall panel |
| mfaEstimate | Estimate mfa simulation parameters |
| MFAParams | The MFAParams class |
| mfaSimulate | MFA simulation |
| newParams | New Params |
| Params | The Params virtual class |
| phenoEstimate | Estimate PhenoPath simulation parameters |
| PhenoParams | The PhenoParams class |
| phenoSimulate | PhenoPath simulation |
| rbindMatched | Bind rows (matched) |
| scDDEstimate | Estimate scDD simulation parameters |
| SCDDParams | The SCDDParams class |
| scDDSimulate | scDD simulation |
| setParam | Set a parameter |
| setParams | Set parameters |
| setParamsUnchecked | Set parameters UNCHECKED |
| setParamUnchecked | Set a parameter UNCHECKED |
| showDFs | Show data.frame |
| showPP | Show pretty print |
| showValues | Show vales |
| simpleEstimate | Estimate simple simulation parameters |
| SimpleParams | The SimpleParams class |
| simpleSimulate | Simple simulation |
| sparseDCEstimate | Estimate SparseDC simulation parameters |
| SparseDCParams | The SparseDCParams class |
| sparseDCSimulate | SparseDC simulation |
| splatEstBCV | Estimate Splat Biological Coefficient of Variation parameters |
| splatEstDropout | Estimate Splat dropout parameters |
| splatEstimate | Estimate Splat simulation parameters |
| splatEstLib | Estimate Splat library size parameters |
| splatEstMean | Estimate Splat mean parameters |
| splatEstOutlier | Estimate Splat expression outlier parameters |
| SplatParams | The SplatParams class |
| splatSimBatchCellMeans | Simulate batch means |
| splatSimBatchEffects | Simulate batch effects |
| splatSimBCVMeans | Simulate BCV means |
| splatSimCellMeans | Simulate cell means |
| splatSimDE | Simulate group differential expression |
| splatSimDropout | Simulate dropout |
| splatSimGeneMeans | Simulate gene means |
| splatSimLibSizes | Simulate library sizes |
| splatSimTrueCounts | Simulate true counts |
| splatSimulate | Splat simulation |
| splatter | splatter. |
| summariseDiff | Summarise diffSCESs |
| winsorize | Winsorize vector |
| zinbEstimate | Estimate ZINB-WaVE simulation parameters |
| ZINBParams | The ZINBParams class |
| zinbSimulate | ZINB-WaVE simulation |
