getInsertionKmerFreq,DsATAC-method | R Documentation |
compute kmer frequencies at insertion sites for each sample
## S4 method for signature 'DsATAC'
getInsertionKmerFreq(
.object,
samples = getSamples(.object),
k = 6,
normGenome = FALSE
)
.object |
|
samples |
sample identifiers |
k |
length of the kmer |
normGenome |
should the result be normalized by genome-wide kmer frequencies |
a matrix
containing kmer frequencies (one row for each kmer and one column for each sample in the dataset)
Fabian Mueller
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