getInsertionKmerFreq-DsATAC-method: getInsertionKmerFreq-methods
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
getInsertionKmerFreq,DsATAC-method R Documentation
getInsertionKmerFreq-methods
Description
compute kmer frequencies at insertion sites for each sample
Usage
## S4 method for signature 'DsATAC'
getInsertionKmerFreq(
.object,
samples = getSamples(.object),
k = 6,
normGenome = FALSE
)
Arguments
.object
DsATAC object
samples
sample identifiers
k
length of the kmer
normGenome
should the result be normalized by genome-wide kmer frequencies
Value
a matrix containing kmer frequencies (one row for each kmer and one column for each sample in the dataset)
Author(s)
Fabian Mueller
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| getInsertionKmerFreq,DsATAC-method | R Documentation |
getInsertionKmerFreq-methods
Description
compute kmer frequencies at insertion sites for each sample
Usage
## S4 method for signature 'DsATAC'
getInsertionKmerFreq(
.object,
samples = getSamples(.object),
k = 6,
normGenome = FALSE
)
Arguments
.object |
|
samples |
sample identifiers |
k |
length of the kmer |
normGenome |
should the result be normalized by genome-wide kmer frequencies |
Value
a matrix containing kmer frequencies (one row for each kmer and one column for each sample in the dataset)
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.