getMotifClustering | R Documentation |
Retrieve motif clustering of TF motifs
getMotifClustering(
k = 0,
distM = NULL,
assembly = "hg38",
motifs = "jaspar",
clusterMethod = "pam"
)
k |
number of clusters. |
distM |
distance matrix ( |
assembly |
genome assembly for which the motifs dissimilarity should be retrieved. Only the species information
of the assembly is really relevant. Can be |
motifs |
a character string specifying the motif set (currently only "jaspar" is supported) |
clusterMethod |
method to be used for motif clustering (currently only |
a list structure containing the clustering result
Fabian Mueller
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