getMotifDistMat: getMotifDistMat
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
getMotifDistMat R Documentation
getMotifDistMat
Description
Retrieve motif dissimilarity/distance matrix for TF motifs
Usage
getMotifDistMat(assembly = "hg38", mmObj = NULL, method = "jaspar")
Arguments
assembly
genome assembly for which the motifs dissimilarity should be retrieved. Only the species information
of the assembly is really relevant. Can be "vert" for all vertebrate motifs.
mmObj
optional motifmatchr object as returned by ChrAccR::prepareMotifmatchr
method
method of dissimilarity quantification. Currently only 'jaspar' (retrieve motif similarities from the annotation of the JASPAR website) is supported.
Value
a matrix of motif DISsimilarities (dist object)
Author(s)
Fabian Mueller
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
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| getMotifDistMat | R Documentation |
getMotifDistMat
Description
Retrieve motif dissimilarity/distance matrix for TF motifs
Usage
getMotifDistMat(assembly = "hg38", mmObj = NULL, method = "jaspar")
Arguments
assembly |
genome assembly for which the motifs dissimilarity should be retrieved. Only the species information
of the assembly is really relevant. Can be |
mmObj |
optional motifmatchr object as returned by |
method |
method of dissimilarity quantification. Currently only |
Value
a matrix of motif DISsimilarities (dist object)
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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