getMotifDistMat.jaspar: getMotifDistMat.jaspar

View source: R/utils_motifs.R

getMotifDistMat.jasparR Documentation

getMotifDistMat.jaspar

Description

Retrieve motif a comparison table from JASPAR annotation website and construct a dissimilarity matrix for given motif IDs

Usage

getMotifDistMat.jaspar(motifIds = NULL, scoreCol = "Ncor")

Arguments

motifIds

string vector of motif ids whose dissimilarities are retrieved

scoreCol

namew of the annotation column in the JASPAR annotation that contains the motif similarity

Value

a matrix of motif DISsimilarities


GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.