getMotifEnrichment,DsATAC-method | R Documentation |
Perform enrichment analysis for (TF) motifs of a query set of regions. Fisher's Exact Test is employed to test the association of motif present in the query set against the background of all regions of that type covered in the object
## S4 method for signature 'DsATAC'
getMotifEnrichment(.object, type, idx, motifs = "jaspar")
.object |
|
type |
character string specifying the region type |
idx |
logical vector or indices of the same length as |
motifs |
either a character string (currently only "jaspar" and sets contained in |
a data.frame
summarizing Fisher's Exact Test enrichment statistics for each motif
Fabian Mueller
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