getMotifOccurrences: getMotifOccurrences
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
getMotifOccurrences R Documentation
getMotifOccurrences
Description
Find occurrences of motifs in a given genome
Usage
getMotifOccurrences(motifNames = NULL, motifDb = "jaspar", genome = "hg38")
Arguments
motifNames
character vector of motif names
motifDb
either a character string (currently only "jaspar" and sets contained in chromVARmotifs ("homer", "encode", "cisbp") are supported) or an object containing PWMs
that can be used by motifmatchr::matchMotifs (such as an PFMatrixList or PWMatrixList object)
genome
character string specifying genome assembly
Value
a GenomicRangesList containing motif occurrences
Author(s)
Fabian Mueller
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
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| getMotifOccurrences | R Documentation |
getMotifOccurrences
Description
Find occurrences of motifs in a given genome
Usage
getMotifOccurrences(motifNames = NULL, motifDb = "jaspar", genome = "hg38")
Arguments
motifNames |
character vector of motif names |
motifDb |
either a character string (currently only "jaspar" and sets contained in |
genome |
character string specifying genome assembly |
Value
a GenomicRangesList containing motif occurrences
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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