getSampleMetrics.snakeATAC | R Documentation |
Retrieve sample summary statistics from the output a snakeATAC pipline run
getSampleMetrics.snakeATAC(sampleAnnot, snakeDir, withPeaks = TRUE)
sampleAnnot |
data.frame specifying the sample annotation table. Must have valid rownames corresponding to the sample ids used in the snakeAtac filenames |
snakeDir |
snakeATAC base directory (where the files are located) |
withPeaks |
flag indicating whether to output peak statistics |
data.frame
containing sample summary statistics. the original sample annotation table will be appended to the summary output
Fabian Mueller
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