getTssEnrichment,DsATAC-method | R Documentation |
Get TSS enrichment data and plot
## S4 method for signature 'DsATAC'
getTssEnrichment(
.object,
sampleId,
tssGr = NULL,
flank = 2000L,
normTailW = 100L,
smoothW = 25L,
silent = FALSE
)
.object |
|
sampleId |
sample to be plotted |
tssGr |
|
flank |
number of bases flanking each TSS that will be added on each side |
normTailW |
number of bases on each side whose counts will be used to normalize the data |
smoothW |
radius of the window (in bp) that will be used to smooth the data, i.e. the total width of the smoothing window will be twice that number |
silent |
limit log messages |
a list containing TSS enrichment data and a ggplot
object containing TSS enrichment plot
Fabian Mueller
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