normalizeMeth-DsNOMe-method: normalizeMeth-methods
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
normalizeMeth,DsNOMe-method R Documentation
normalizeMeth-methods
Description
Normalize methylation levels
Usage
## S4 method for signature 'DsNOMe'
normalizeMeth(.object, type = "sites", method = "quantile", reaggregate = TRUE)
Arguments
.object
DsNOMe object
type
character string specifying a name for the region type (default: sites)
method
normalization method to be applied. Currently only 'quantile' is supported
reaggregate
redo region aggregation (only has an effect if type is sites and there are aggregated regions in the dataset)
Value
a new DsNOMe object with normalized methylation levels
Author(s)
Fabian Mueller
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
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| normalizeMeth,DsNOMe-method | R Documentation |
normalizeMeth-methods
Description
Normalize methylation levels
Usage
## S4 method for signature 'DsNOMe'
normalizeMeth(.object, type = "sites", method = "quantile", reaggregate = TRUE)
Arguments
.object |
|
type |
character string specifying a name for the region type (default: sites) |
method |
normalization method to be applied. Currently only 'quantile' is supported |
reaggregate |
redo region aggregation (only has an effect if type is sites and there are aggregated regions in the dataset) |
Value
a new DsNOMe object with normalized methylation levels
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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