prepareMotifmatchr: prepareMotifmatchr

View source: R/utils_motifs.R

prepareMotifmatchrR Documentation

prepareMotifmatchr

Description

prepare objects for a motifmatchr analysis

Usage

prepareMotifmatchr(genome, motifs)

Arguments

genome

character string specifying genome assembly

motifs

either a character string (currently only "jaspar" and sets contained in chromVARmotifs ("homer", "encode", "cisbp") are supported) or an object containing PWMs that can be used by motifmatchr::matchMotifs (such as an PFMatrixList or PWMatrixList object)

Value

a list containing objects to be used as arguments for motifmatchr

Author(s)

Fabian Mueller


GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.