projectMatrix_UMAP: projectMatrix_UMAP
In GreenleafLab/ChrAccR: Analyzing chromatin accessibility data in R
projectMatrix_UMAP R Documentation
projectMatrix_UMAP
Description
given a (count) matrix and dimension reduction result, return the projected UMAP coordinates
in the embedding space
Usage
projectMatrix_UMAP(X, umapObj, binarize = TRUE, addPcCoord = FALSE)
Arguments
X
matrix to be projected (features X samples)
umapObj
dimension reduction result as returned by dimRed_UMAP
binarize
binarize the counts before projecting
addPcCoord
also add PC coordinates to the resulting matrix
Value
Projected UMAP coordinates
Author(s)
Fabian Mueller
GreenleafLab/ChrAccR documentation built on March 22, 2023, 11:42 p.m.
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| projectMatrix_UMAP | R Documentation |
projectMatrix_UMAP
Description
given a (count) matrix and dimension reduction result, return the projected UMAP coordinates in the embedding space
Usage
projectMatrix_UMAP(X, umapObj, binarize = TRUE, addPcCoord = FALSE)
Arguments
X |
matrix to be projected (features X samples) |
umapObj |
dimension reduction result as returned by |
binarize |
binarize the counts before projecting |
addPcCoord |
also add PC coordinates to the resulting matrix |
Value
Projected UMAP coordinates
Author(s)
Fabian Mueller
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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