regionAggregation,DsATAC-method | R Documentation |
Aggregate signal counts across a set of regions
## S4 method for signature 'DsATAC'
regionAggregation(
.object,
regGr,
type,
signal = NULL,
aggrFun = "median",
dropEmpty = TRUE,
bySample = TRUE,
chunkSize = 5000L
)
.object |
|
regGr |
|
type |
character string specifying a name for the region type |
signal |
character string specifying a name for the region type for the signal to be aggregated
If it is |
aggrFun |
aggregation function for signal counts. Will only be used if |
dropEmpty |
discard all regions with no observed signal counts |
bySample |
[only relevant if |
chunkSize |
[only relevant if |
a new DsATAC
object with aggregated signal counts per regions
Fabian Mueller
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